When you synchronize your domains after deleting a directory,
all users and groups in that directory are marked obsolete in the
database. They will not be returned in any search from Administration
Console.
Note: Enterprise domains require at least one authentication
provider and directory provider.
In Administration Console, click Settings > User Management
> Domain Management.
Click the appropriate domain in the list.
Select the check box for the appropriate directory and click
Delete.
Click OK on the confirmation page that appears and click
OK again.
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